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Sample GSM7916517 Query DataSets for GSM7916517
Status Public on Dec 02, 2023
Title WT anther stage10 biological replicate2 [WT10-2]
Sample type SRA
Source name anther
Organism Oryza sativa
Characteristics tissue: anther
Stage: 10
genotype: WT
treatment: untreated
Treatment protocol untreated
Growth protocol Rice plants were grown in the field during the rice growing season in Nanjing (N 32.02°, E 118.51°).
Extracted molecule total RNA
Extraction protocol Anthers on certain stages were picked with
RNA library was prepared with VAHTS Universal V6 RNA-seq Library Prep Kit for MGI
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model MGISEQ-2000RS
Description WT10 biol rep2
Data processing HISAT 2.2.0 was used for reads mapping (with default parameter).
featureCounts was used for count extraction and normalization.
Assembly: IRGSP-1.0/GCA_001433935.1
Supplementary files format and content: tab-delimited text file include FPKM values for each sample
Submission date Nov 23, 2023
Last update date Dec 02, 2023
Contact name Yuxing Fang
Organization name Peking University
Street address Peking University
City Beijing
ZIP/Postal code 100091
Country China
Platform ID GPL33951
Series (1)
GSE248536 Rice transcriptional repressor OsTIE1 controls anther dehiscence and male sterility by regulating JA biosynthesis
BioSample SAMN38392817
SRA SRX22630120

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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