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Sample GSM8106135 Query DataSets for GSM8106135
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCLB371IUF)
Sample type SRA
 
Source name Caenorhabditis elegans strain OP82 (unc-119(tm4063) III; wgIs82) mixed sex L2 larva insertion targeting C. elegans ceh-16
Organism Caenorhabditis elegans
Characteristics antibody: ceh-16
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS769RNK (SAMN40085601)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS769RNK
Sex: pooled male and female
dev stage: L2 larva
age: unknown
donor_id: ENCDO426ALQ
lab: Michael Snyder, Stanford
source: CGC
link: ENCBS769RNK at ENCODE; https://www.encodeproject.org/ENCBS769RNK/
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Description https://www.encodeproject.org/experiments/ENCSR004JBX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against eGFP-ceh-16 in L2 larva worms.
experiment encode accession: ENCSR004JBX
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR445KQZ
encode release date: 2014-03-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB371IUF
size range: 150-350
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13776
Series (1)
GSE256550 TF ChIP-seq from whole organism (ENCSR004JBX)
Relations
BioSample SAMN40085601

Supplementary file Size Download File type/resource
GSM8106135_ENCFF003KDO_read-depth_normalized_signal_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF007FGS_signal_of_unique_reads_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF155LEH_signal_of_unique_reads_ce11.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF225UEK_peaks_and_background_as_input_for_IDR_ce11.bed.gz 702.9 Kb (ftp)(http) BED
GSM8106135_ENCFF259QRE_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106135_ENCFF323VWM_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF429EJH_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF480EYP_read-depth_normalized_signal_ce10.bigWig 9.7 Mb (ftp)(http) BIGWIG
GSM8106135_ENCFF642SMS_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106135_ENCFF729HXM_peaks_and_background_as_input_for_IDR_ce10.bed.gz 702.7 Kb (ftp)(http) BED
GSM8106135_ENCLB371IUF_README.txt.gz 1.8 Kb (ftp)(http) TXT
Raw data are available in SRA

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