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Sample GSM8106142 Query DataSets for GSM8106142
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCLB211URW)
Sample type SRA
Source name Drosophila melanogaster strain CG9876-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster CG9876
Organism Drosophila melanogaster
Characteristics antibody: CG9876
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS257JQU (SAMN40086631)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS257JQU
note: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG9876
Sex: pooled male and female
dev stage: embryonic
age: 0-24 hour
donor_id: ENCDO186GEA
lab: Kevin White, UChicago
source: Kevin White
link: ENCBS257JQU at ENCODE;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG9876-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR004RJS
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR033RMH
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB211URW
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13304
Series (1)
GSE256555 TF ChIP-seq from whole organism (ENCSR004RJS)
BioSample SAMN40086631

Supplementary file Size Download File type/resource
GSM8106142_ENCFF026IBT_read-depth_normalized_signal_dm3.bigWig 14.7 Mb (ftp)(http) BIGWIG
GSM8106142_ENCFF057HHA_peaks_and_background_as_input_for_IDR_dm6.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106142_ENCFF220OLN_control_normalized_signal_dm3.bigWig 15.2 Mb (ftp)(http) BIGWIG
GSM8106142_ENCFF272VVQ_peaks_and_background_as_input_for_IDR_dm3.bed.gz 753.8 Kb (ftp)(http) BED
GSM8106142_ENCFF552YBE_peaks_and_background_as_input_for_IDR_dm6.bed.gz 753.2 Kb (ftp)(http) BED
GSM8106142_ENCFF573ZLT_signal_of_unique_reads_dm3.bigWig 14.6 Mb (ftp)(http) BIGWIG
GSM8106142_ENCFF761TRN_peaks_and_background_as_input_for_IDR_dm3.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106142_ENCFF815FNH_control_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106142_ENCFF863OIR_signal_of_unique_reads_dm6.bigWig 16.7 Mb (ftp)(http) BIGWIG
GSM8106142_ENCFF885JCD_read-depth_normalized_signal_dm6.bigWig 16.7 Mb (ftp)(http) BIGWIG
GSM8106142_ENCLB211URW_README.txt.gz 1.8 Kb (ftp)(http) TXT
Raw data are available in SRA

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