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Sample GSM8106146 Query DataSets for GSM8106146
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCLB849KLH)
Sample type SRA
Source name Drosophila melanogaster strain Pdp1-MiMIC-GFP mixed sex embryo (0-24 hours) insertion targeting D. melanogaster Pdp1
Organism Drosophila melanogaster
Characteristics antibody: Pdp1
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS008URC (SAMN40086048)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS008URC
note: D. mel line contraining an intronic eGFP exon to create a Pdp1-GFP fusion gene
Sex: pooled male and female
dev stage: embryonic
age: 0-24 hour
donor_id: ENCDO034JNF
lab: Kevin White, UChicago
source: Hugo Bellen
link: ENCBS008URC at ENCODE;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing Pdp1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR005MLL
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR546LJI
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB849KLH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13304
Series (1)
GSE256558 TF ChIP-seq from whole organism (ENCSR005MLL)
BioSample SAMN40086048

Supplementary file Size Download File type/resource
GSM8106146_ENCFF078TQL_peaks_and_background_as_input_for_IDR_dm6.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106146_ENCFF078YNT_read-depth_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106146_ENCFF146DOY_control_normalized_signal_dm3.bigWig 15.2 Mb (ftp)(http) BIGWIG
GSM8106146_ENCFF177DIR_control_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106146_ENCFF206RZQ_signal_of_unique_reads_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106146_ENCFF445JLD_peaks_and_background_as_input_for_IDR_dm3.bed.gz 733.0 Kb (ftp)(http) BED
GSM8106146_ENCFF502NUM_peaks_and_background_as_input_for_IDR_dm3.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106146_ENCFF568PIJ_peaks_and_background_as_input_for_IDR_dm6.bed.gz 732.7 Kb (ftp)(http) BED
GSM8106146_ENCFF832DIG_signal_of_unique_reads_dm3.bigWig 14.5 Mb (ftp)(http) BIGWIG
GSM8106146_ENCFF920CDI_read-depth_normalized_signal_dm3.bigWig 14.5 Mb (ftp)(http) BIGWIG
GSM8106146_ENCLB849KLH_README.txt.gz 1.9 Kb (ftp)(http) TXT
Raw data are available in SRA

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