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Sample GSM8106285 Query DataSets for GSM8106285
Status Public on Feb 27, 2024
Title Control ChIP-seq from whole organism (ENCLB504KBA)
Sample type SRA
Source name Caenorhabditis elegans strain OP388 (unc-119(ed3) III; wgIs388) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans lim-6
Organism Caenorhabditis elegans
Characteristics cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS535IZX (SAMN40085177)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS535IZX
note: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIM-6
Sex: hermaphrodite
dev stage: late embryonic
age: unknown
donor_id: ENCDO637SPW
lab: Valerie Reinke, Yale
source: Valerie Reinke
worm synchronization stage: egg bleaching
post synchronization time: 5
post synchronization time units: hour
link: ENCBS535IZX at ENCODE;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing LIM-6-eGFP fusion proteins.
experiment encode accession: ENCSR194OUP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB504KBA
fragmentation methods: sonication (generic microtip)
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL18245
Series (1)
GSE256639 Control ChIP-seq from whole organism (ENCSR194OUP)
BioSample SAMN40085177

Supplementary file Size Download File type/resource
GSM8106285_ENCFF317CPO_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF340TRX_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF544VSN_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF753HWG_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCLB504KBA_README.txt.gz 555 b (ftp)(http) TXT
Raw data are available in SRA

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