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Sample GSM8106285 Query DataSets for GSM8106285
Status Public on Feb 27, 2024
Title Control ChIP-seq from whole organism (ENCLB504KBA)
Sample type SRA
 
Source name Caenorhabditis elegans strain OP388 (unc-119(ed3) III; wgIs388) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans lim-6
Organism Caenorhabditis elegans
Characteristics cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS535IZX (SAMN40085177)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS535IZX
note: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to LIM-6
Sex: hermaphrodite
dev stage: late embryonic
age: unknown
donor_id: ENCDO637SPW
lab: Valerie Reinke, Yale
source: Valerie Reinke
worm synchronization stage: egg bleaching
post synchronization time: 5
post synchronization time units: hour
link: ENCBS535IZX at ENCODE; https://www.encodeproject.org/ENCBS535IZX/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/d89f19f3-31f8-4079-9635-5d3dd799471e/@@download/attachment/Reinke_Lab_ModENCODE_ChIP_protocol_%28revised%205-24-13%29_4_mg.pdf
other: https://www.encodeproject.org/documents/a7f694b9-8850-41f6-9a6f-89ba849beee3/@@download/attachment/561.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR194OUP/
***************
biological replicate number: 1
technical replicate number: 1
description: This is the ChIP-seq control of transgenic worms expressing LIM-6-eGFP fusion proteins.
experiment encode accession: ENCSR194OUP
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2016-05-10
lab: Valerie Reinke, Yale
library encode accession: ENCLB504KBA
fragmentation methods: sonication (generic microtip)
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18245
Series (1)
GSE256639 Control ChIP-seq from whole organism (ENCSR194OUP)
Relations
BioSample SAMN40085177

Supplementary file Size Download File type/resource
GSM8106285_ENCFF317CPO_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF340TRX_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF544VSN_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCFF753HWG_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106285_ENCLB504KBA_README.txt.gz 555 b (ftp)(http) TXT
Raw data are available in SRA

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