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Sample GSM8120935 Query DataSets for GSM8120935
Status Public on Mar 04, 2024
Title Mouse2, WT, Small-WT_2 (GeoMx)
Sample type SRA
 
Source name brain
Organism Mus musculus
Characteristics tissue: brain
cell line: GSC83
cell type: mesenchymal glioma stem cell
genotype: EGFR-WT
treatment: CD31+
Extracted molecule total RNA
Extraction protocol FFPE GeoMx Digital Spatial Profiling on CD31+ AOIs
GeoMx NGS library preparation with SeqCode Dual Index Primers
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NovaSeq 6000
 
Description B022-A-mouseWTA-007
DSP-1001660005544-A-A07_RIA1443A7-7
Mm_R_NGS_WTA_v1.0.pkc
Q3_5% Filtered.xlsx
Data processing FASTQ converted to DCC files through Nanostring's pipeline
Assembly: GeoMx NGS Barcode sequencing
Supplementary files format and content: DCC files generated through Nanostring's pipeline
Library strategy: Spatial Transcriptomics
 
Submission date Feb 29, 2024
Last update date Mar 04, 2024
Contact name Janusz Rak
E-mail(s) janusz.rak@mcgill.ca
Organization name McGill University
Department Department of Pediatrics
Lab Lab or Dr. Janusz Rak
Street address 1001 Decarie Blvd. Room E01.4366
City Montreal
State/province Quebec
ZIP/Postal code H4A 3J1
Country Canada
 
Platform ID GPL24247
Series (1)
GSE207360 Mesenchymal glioma stem cells trigger vasectasia, a distinct neovascularization process mediated by extracellular vesicles carrying EGFR [scRNA-seq]
Relations
BioSample SAMN40209725
SRA SRX23801776

Supplementary file Size Download File type/resource
GSM8120935_DSP-1001660005544-A-A07.dcc.gz 59.5 Kb (ftp)(http) DCC
SRA Run SelectorHelp
Raw data are available in SRA

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