|
| Status |
Public on Mar 04, 2024 |
| Title |
Mouse3, KO, Small_3 (GeoMx) |
| Sample type |
SRA |
| |
|
| Source name |
brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: brain
cell line: GSC83
cell type: mesenchymal glioma stem cell
genotype: EGFR-KO
treatment: CD31+
|
| Extracted molecule |
total RNA |
| Extraction protocol |
FFPE GeoMx Digital Spatial Profiling on CD31+ AOIs
GeoMx NGS library preparation with SeqCode Dual Index Primers
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
B022-A-mouseWTA-011
DSP-1001660005544-A-A11_RIA1443A11-11
Mm_R_NGS_WTA_v1.0.pkc
Q3_5% Filtered.xlsx
|
| Data processing |
FASTQ converted to DCC files through Nanostring's pipeline
Assembly: GeoMx NGS Barcode sequencing
Supplementary files format and content: DCC files generated through Nanostring's pipeline
Library strategy: Spatial Transcriptomics
|
| |
|
| Submission date |
Feb 29, 2024 |
| Last update date |
Mar 04, 2024 |
| Contact name |
Janusz Rak |
| E-mail(s) |
janusz.rak@mcgill.ca
|
| Organization name |
McGill University
|
| Department |
Department of Pediatrics
|
| Lab |
Lab or Dr. Janusz Rak
|
| Street address |
1001 Decarie Blvd. Room E01.4366
|
| City |
Montreal |
| State/province |
Quebec |
| ZIP/Postal code |
H4A 3J1 |
| Country |
Canada |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE207360 |
Mesenchymal glioma stem cells trigger vasectasia, a distinct neovascularization process mediated by extracellular vesicles carrying EGFR [scRNA-seq] |
|
| Relations |
| BioSample |
SAMN40209721 |
| SRA |
SRX23801780 |
