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Sample GSM8120954 Query DataSets for GSM8120954
Status Public on Mar 04, 2024
Title Mouse5, WT, Small-WT_1 (GeoMx)
Sample type SRA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
cell line: GSC83
cell type: mesenchymal glioma stem cell
genotype: EGFR-WT
treatment: CD31+
Extracted molecule total RNA
Extraction protocol FFPE GeoMx Digital Spatial Profiling on CD31+ AOIs
GeoMx NGS library preparation with SeqCode Dual Index Primers
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NovaSeq 6000
Description B022-B-mouseWTA-003
Q3_5% Filtered.xlsx
Data processing FASTQ converted to DCC files through Nanostring's pipeline
Assembly: GeoMx NGS Barcode sequencing
Supplementary files format and content: DCC files generated through Nanostring's pipeline
Library strategy: Spatial Transcriptomics
Submission date Feb 29, 2024
Last update date Mar 04, 2024
Contact name Janusz Rak
Organization name McGill University
Department Department of Pediatrics
Lab Lab or Dr. Janusz Rak
Street address 1001 Decarie Blvd. Room E01.4366
City Montreal
State/province Quebec
ZIP/Postal code H4A 3J1
Country Canada
Platform ID GPL24247
Series (1)
GSE207360 Mesenchymal glioma stem cells trigger vasectasia, a distinct neovascularization process mediated by extracellular vesicles carrying EGFR [scRNA-seq]
BioSample SAMN40209707
SRA SRX23801794

Supplementary file Size Download File type/resource
GSM8120954_DSP-1001660005544-A-C01.dcc.gz 58.6 Kb (ftp)(http) DCC
SRA Run SelectorHelp
Raw data are available in SRA

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