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Sample GSM8140966 Query DataSets for GSM8140966
Status Public on Mar 12, 2024
Title Sample 2
Sample type RNA
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat10
resistance: CTLA4res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat10_9
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
VALUE Quantile-normalized and log-transformed data.

Data table
A2M 4.488149393
ABCB1 4.095615944
ABCF1 4.666707732
ABL1 4.759001155
ACOT12 4.520232973
ACSF3 4.377418598
ACTA2 3.609565614
ACTB 6.868407713
ACTR3B 4.914188998
ACVR1B 3.998103277
ACVR1C 3.723992997
ACVR2A 3.834706867
ACY1 3.573163399
ADA 4.157565348
ADAM12 3.998103277
ADGRE1 3.822795925
ADH1A 4.327872765
ADH1B 3.978741823
ADH1C 4.16308315
ADH4 4.00383433

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.

Supplementary data files not provided

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