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Sample GSM8140967 Query DataSets for GSM8140967
Status Public on Mar 12, 2024
Title Sample 3
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat13
resistance: CTLA4res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat13_27
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 7.08259089
ABCB1 3.972524671
ABCF1 4.737029583
ABL1 4.138574042
ACOT12 4.11005245
ACSF3 4.486506782
ACTA2 3.926356578
ACTB 9.495940324
ACTR3B 4.16308315
ACVR1B 4.506706626
ACVR1C 3.880106178
ACVR2A 3.956036661
ACY1 4.024466487
ADA 3.531472019
ADAM12 4.047610623
ADGRE1 3.863064523
ADH1A 4.113623435
ADH1B 2.703538957
ADH1C 4.164554466
ADH4 4.019281036

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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