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Sample GSM8140979 Query DataSets for GSM8140979
Status Public on Mar 12, 2024
Title Sample 15
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat27
resistance: CTLA4res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat27_18
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 7.333341973
ABCB1 3.937607641
ABCF1 5.424481479
ABL1 5.268526154
ACOT12 4.164286279
ACSF3 4.550503523
ACTA2 5.137287562
ACTB 9.495940324
ACTR3B 4.23893475
ACVR1B 4.289096702
ACVR1C 3.585970484
ACVR2A 4.274478103
ACY1 5.667886023
ADA 4.281435026
ADAM12 3.873262842
ADGRE1 3.381893634
ADH1A 3.757115036
ADH1B 3.728084355
ADH1C 3.964189924
ADH4 3.900557816

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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