NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM8140981 Query DataSets for GSM8140981
Status Public on Mar 12, 2024
Title Sample 17
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat27
resistance: CTLA4res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat27_25
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 7.97298843
ABCB1 3.489064986
ABCF1 4.124385951
ABL1 5.297928996
ACOT12 3.956231561
ACSF3 4.703503234
ACTA2 4.433189209
ACTB 9.127360082
ACTR3B 5.057105501
ACVR1B 4.156574074
ACVR1C 3.785786769
ACVR2A 3.682114121
ACY1 5.235521195
ADA 4.509307628
ADAM12 3.961777652
ADGRE1 3.328305274
ADH1A 4.467966595
ADH1B 3.350664533
ADH1C 3.846859927
ADH4 4.2773449

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap