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Sample GSM8140982 Query DataSets for GSM8140982
Status Public on Mar 12, 2024
Title Sample 18
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat32
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat32_32
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.214434026
ABCB1 3.809370184
ABCF1 4.763148814
ABL1 5.097855429
ACOT12 4.059107751
ACSF3 4.792401984
ACTA2 3.876762491
ACTB 7.724174217
ACTR3B 4.916075926
ACVR1B 4.133460999
ACVR1C 3.976363636
ACVR2A 3.423722738
ACY1 3.800802507
ADA 4.691071827
ADAM12 3.591135026
ADGRE1 3.591135026
ADH1A 3.794315239
ADH1B 3.310699749
ADH1C 3.871727086
ADH4 4.15872966

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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