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Sample GSM8140983 Query DataSets for GSM8140983
Status Public on Mar 12, 2024
Title Sample 19
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat39
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat39_20
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.717492173
ABCB1 3.894254498
ABCF1 5.207275731
ABL1 4.916075926
ACOT12 3.944012042
ACSF3 4.558086552
ACTA2 4.385037595
ACTB 9.869253034
ACTR3B 4.403363025
ACVR1B 4.72893575
ACVR1C 3.597031293
ACVR2A 4.843070717
ACY1 4.759865996
ADA 3.872976998
ADAM12 3.733435985
ADGRE1 3.395726219
ADH1A 3.916589648
ADH1B 3.346873034
ADH1C 3.80703909
ADH4 3.762766013

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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