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Sample GSM8140984 Query DataSets for GSM8140984
Status Public on Mar 12, 2024
Title Sample 20
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat39
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat39_23
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.763148814
ABCB1 4.038430517
ABCF1 5.34355683
ABL1 4.882285421
ACOT12 3.968388092
ACSF3 4.72029612
ACTA2 4.282176716
ACTB 9.869253034
ACTR3B 4.507214923
ACVR1B 4.944510876
ACVR1C 3.760301084
ACVR2A 4.8569161
ACY1 4.732362577
ADA 4.01408168
ADAM12 3.616848398
ADGRE1 3.898770077
ADH1A 3.734881489
ADH1B 3.209453366
ADH1C 3.993396798
ADH4 3.798569004

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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