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Sample GSM8140985 Query DataSets for GSM8140985
Status Public on Mar 12, 2024
Title Sample 21
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat42
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat42_26
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 6.770515061
ABCB1 3.587739212
ABCF1 4.7011257
ABL1 5.186629201
ACOT12 3.963006674
ACSF3 4.302091018
ACTA2 5.327200574
ACTB 9.495940324
ACTR3B 4.124385951
ACVR1B 4.320826262
ACVR1C 3.52683617
ACVR2A 3.919852643
ACY1 4.658727462
ADA 3.937334266
ADAM12 4.455611815
ADGRE1 3.785786769
ADH1A 3.658930117
ADH1B 3.489064986
ADH1C 3.832481724
ADH4 3.868809945

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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