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Sample GSM8140986 Query DataSets for GSM8140986
Status Public on Mar 12, 2024
Title Sample 22
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat42
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat42_29
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 7.724174217
ABCB1 3.56753498
ABCF1 4.863815919
ABL1 5.17698329
ACOT12 3.835098224
ACSF3 4.33041961
ACTA2 4.825960656
ACTB 9.495940324
ACTR3B 4.15786086
ACVR1B 4.206889372
ACVR1C 3.381893634
ACVR2A 3.990974373
ACY1 4.237808758
ADA 4.11471629
ADAM12 4.367968457
ADGRE1 3.860893399
ADH1A 3.757115036
ADH1B 3.33717395
ADH1C 3.79664464
ADH4 3.699013024

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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