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Sample GSM8140987 Query DataSets for GSM8140987
Status Public on Mar 12, 2024
Title Sample 23
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat44
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat44_1
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.886256433
ABCB1 4.083904188
ABCF1 4.901035557
ABL1 4.684613654
ACOT12 3.828479808
ACSF3 4.532544874
ACTA2 4.636802345
ACTB 9.495940324
ACTR3B 4.093672847
ACVR1B 4.292172187
ACVR1C 4.119177652
ACVR2A 4.393919527
ACY1 4.519624417
ADA 4.515608284
ADAM12 4.470914666
ADGRE1 3.783186253
ADH1A 3.79032362
ADH1B 3.50947791
ADH1C 3.882685117
ADH4 4.012578285

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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