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Sample GSM8140988 Query DataSets for GSM8140988
Status Public on Mar 12, 2024
Title Sample 24
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat44
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat44_3
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.197082436
ABCB1 3.854226283
ABCF1 5.225343767
ABL1 5.504798062
ACOT12 3.978303901
ACSF3 4.569411383
ACTA2 4.325820443
ACTB 9.127360082
ACTR3B 4.889829394
ACVR1B 4.418617975
ACVR1C 3.643012044
ACVR2A 4.285012356
ACY1 4.730260119
ADA 4.474603514
ADAM12 3.896282267
ADGRE1 3.266004642
ADH1A 3.655831908
ADH1B 2.569182684
ADH1C 3.580716078
ADH4 4.057822905

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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