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Sample GSM8140990 Query DataSets for GSM8140990
Status Public on Mar 12, 2024
Title Sample 26
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat45
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat45_2
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 4.742979783
ABCB1 3.511451716
ABCF1 4.188995552
ABL1 5.186629201
ACOT12 4.410339646
ACSF3 4.802949201
ACTA2 5.192762631
ACTB 9.495940324
ACTR3B 5.203226421
ACVR1B 4.411083581
ACVR1C 3.369128719
ACVR2A 3.875547563
ACY1 5.605254076
ADA 4.317033253
ADAM12 4.198616663
ADGRE1 4.079501988
ADH1A 3.855014458
ADH1B 3.369128719
ADH1C 4.330064865
ADH4 4.172172613

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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