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Sample GSM8140991 Query DataSets for GSM8140991
Status Public on Mar 12, 2024
Title Sample 27
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat45
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat45_4
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 5.137287562
ABCB1 3.865227061
ABCF1 4.12665674
ABL1 5.511652348
ACOT12 4.608761559
ACSF3 4.798396195
ACTA2 4.100172852
ACTB 9.495940324
ACTR3B 4.844831616
ACVR1B 3.851160642
ACVR1C 3.6208008
ACVR2A 4.048299946
ACY1 4.276988863
ADA 4.33426223
ADAM12 3.897157133
ADGRE1 3.719825249
ADH1A 3.908410054
ADH1B 3.637862
ADH1C 4.022234158
ADH4 4.240281498

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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