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Sample GSM8140992 Query DataSets for GSM8140992
Status Public on Mar 12, 2024
Title Sample 28
Sample type RNA
 
Source name melanoma
Organism Homo sapiens
Characteristics patient: Pat46
resistance: PD1res
Extracted molecule total RNA
Extraction protocol Tissue microarray cores were stained using immunofluorescence with CD3 (T-cell), CD20 (B-cell), PMEL/S100B (tumor cell) and DAPI antibodies, and tumor cell-containing regions of interest were selected based on these stainings.
Label not applicable
Label protocol Not applicable
 
Hybridization protocol Not applicable
Scan protocol Not applicable
Description Pat46_8
Data processing The NanoString GeoMx Cancer Transcriptome Atlas assay was applied to the Regions of Interest according to the manufacturer’s instructions (Nanostring, Seattle, WA). The data were retreived as values that are scaled to the same 75% percentile across the regions.
The data underwent quantile-normalization and log-transformation as log2 (data+1).
 
Submission date Mar 11, 2024
Last update date Mar 12, 2024
Contact name Martin Lauss
Organization name Lund University
Department Dept of Oncology
Street address Barngatan 2B
City Lund
ZIP/Postal code 22185
Country Sweden
 
Platform ID GPL34293
Series (2)
GSE244984 Molecular patterns of resistance to immune checkpoint blockade in melanoma
GSE261347 Molecular patterns of resistance to immune checkpoint blockade in melanoma [NanoString GeoMx]

Data table header descriptions
ID_REF
VALUE Quantile-normalized and log-transformed data.

Data table
ID_REF VALUE
A2M 6.019847758
ABCB1 4.153635382
ABCF1 4.677250581
ABL1 5.424481479
ACOT12 4.471865726
ACSF3 4.28808067
ACTA2 3.863064523
ACTB 8.812060652
ACTR3B 4.570874198
ACVR1B 4.091399554
ACVR1C 3.496616288
ACVR2A 3.788820403
ACY1 3.951461457
ADA 4.072603749
ADAM12 4.771544846
ADGRE1 3.29331985
ADH1A 3.776647402
ADH1B 3.026609705
ADH1C 3.814153452
ADH4 3.918078407

Total number of rows: 1825

Table truncated, full table size 31 Kbytes.




Supplementary data files not provided

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