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Sample GSM8217997 Query DataSets for GSM8217997
Status Public on May 11, 2024
Title 207760740037_R11C01
Sample type genomic
 
Source name Human cell line DNA
Organism Homo sapiens
Characteristics input_ng: 237.93
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from 30-70 mg of tissue or 5.0 x 10^6 cells for cell lines using commercially available QIAGEN QIAamp Mini Kit (QIAGEN, 51304), following the manufacturer’s protocol. DNA was quantified using a Qubit 4 Fluorometer (Invitrogen).
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description GM12878
Data processing SeSAMe software v1.22, openSesame and IDATs are de-identified to mask SNP probe readings
 
Submission date Apr 19, 2024
Last update date May 11, 2024
Contact name Wanding Zhou
Organization name Children's Hospital of Philadelphia
Department Pathology and Lab Medicine
Street address 3501 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL34394
Series (1)
GSE264438 MSA: Scalable DNA methylation BeadChip for human trait screening

Data table header descriptions
ID_REF
VALUE Normalized average Beta
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
cg06185909_TC11 0.231646051 0.001180566
cg18975462_BC11 0.02318136 0.003882479
cg20516119_TC11 0.047826337 0.034831664
cg10149399_BC11 0.750514951 0.008914939
cg24004665_BC11 0.087756382 0.046023859
cg12923664_BC11 0.708325197 0.051768755
cg13242781_TC11 0.347259187 0.038156975
cg21628163_BC11 0.644214489 0.005598559
cg00144638_BC11 0.671617805 0.003639063
cg00483256_TC11 0.383480338 0.011903023
cg00590230_BC11 0.017171326 0.002008179
cg00614426_BC11 0.869410968 0.006620905
cg00676694_BC11 0.27431113 0.003675576
cg00791311_BC11 0.373305608 0.03087727
cg01804429_BC11 0.073848195 0.005866316
cg02259181_BC11 0.225990371 0.017513753
cg06744254_BC11 0.390129202 0.017197313
cg06904431_BC11 0.881526571 0.005622901
cg13093971_BC11 0.94423993 0.014166788
cg13149485_BC11 0.050086657 0.007290297

Total number of rows: 284317

Table truncated, full table size 11023 Kbytes.




Supplementary file Size Download File type/resource
GSM8217997_207760740037_R11C01_Grn.idat.gz 2.8 Mb (ftp)(http) IDAT
GSM8217997_207760740037_R11C01_Red.idat.gz 2.8 Mb (ftp)(http) IDAT

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