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Sample GSM822331 Query DataSets for GSM822331
Status Public on Sep 15, 2015
Title MM_14KBq
Sample type genomic
Source name Bone marrow
Organism Homo sapiens
Characteristics tumor: multiple myeloma
tissue: bone marrow
cell type: purified CD138+ plasma cells
Extracted molecule genomic DNA
Extraction protocol DNA was extracted using the DNA AllPrep DNA/RNA MiniKit (Qiagen, Valencia, CA). DNA quality and quantity were assessed using the Nanodrop Spectrophotometer (NanoDrop Technologies, Inc. Wilmington, DE).
Label Biotin
Label protocol According to manufacturer protocol
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the GeneChip Scanner 3000 7G.
Description SUBMITTER_COMMENT: Relevant clinical data are included in the original paper, please read the article.
Data processing Affymetrix Genotyping Console 4.0 for processing SNPs, detecting copy number abnormalities with default parameters.
Submission date Oct 25, 2011
Last update date Sep 15, 2015
Contact name Wilfried Gouraud
Organization name ICO - UMGC
Department Integrated Center of Oncology René Gauducheau
Lab Omics Data Science Unit
Street address bd Jacques Monod
City Saint Herblain
ZIP/Postal code 44805
Country France
Platform ID GPL6801
Series (1)
GSE31272 NF-kB activation confers a prolonged event-free-survival in newly diagnosed myeloma patients harboring t(4;14) treated with bortezomib.

Data table header descriptions
ID_REF Probe Set ID
VALUE Processed data genotype

Data table
SNP_A-2131660 BB
SNP_A-1967418 AB
SNP_A-1969580 BB
SNP_A-4263484 AB
SNP_A-1978185 AA
SNP_A-4264431 AA
SNP_A-1980898 BB
SNP_A-1983139 AA
SNP_A-4265735 AB
SNP_A-1995832 BB
SNP_A-1995893 BB
SNP_A-1997689 BB
SNP_A-1997709 AA
SNP_A-1997896 AB
SNP_A-1997922 AB
SNP_A-2000230 AA
SNP_A-2000332 AB
SNP_A-2000337 AA
SNP_A-2000342 AA
SNP_A-4268173 AA

Total number of rows: 909622

Table truncated, full table size 15137 Kbytes.

Supplementary file Size Download File type/resource
GSM822331_MM_14KBq.CN.txt.gz 20.3 Mb (ftp)(http) TXT
GSM822331_PR_14KBq_3tj3ejfM_Q7_SNP6.CEL.gz 29.9 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data provided as supplementary file

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