|
| Status |
Public on May 07, 2024 |
| Title |
MPRA from GM12878 (ENCLB741ROG) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens GM12878 cell line genetically modified (episome) using transient transfection, 24 hours post-nucleic acid delivery time
|
| Organism |
Homo sapiens |
| Characteristics |
line: GM12878
biomaterial_type: cell line
biosample encode accession: ENCBS639KKF (SAMN41092777)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS639KKF
Sex: female
health state: unknown
dev stage: adult
age: unknown
passage number: 9
donor_id: ENCDO000AAK
lab: Ryan Tewhey, JAX
source: ATCC
link: ENCBS639KKF at ENCODE; https://www.encodeproject.org/ENCBS639KKF/
|
| Extracted molecule |
total RNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/af9db6cf-b70f-4de9-8d78-accc77bfaf38/@@download/attachment/ENCODE%20MPRA%20Protocol%20-%20Tewhey%20Lab.pdf
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR015VGW/
***************
biological replicate number: 4
technical replicate number: 1
description:
experiment encode accession: ENCSR015VGW
assay title: MPRA
assembly: hg19, GRCh38
encode release date: 2023-02-12
lab: Ryan Tewhey, JAX
library encode accession: ENCLB741ROG
fragmentation methods: none
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
May 06, 2024 |
| Last update date |
May 08, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
|
| Relations |
| BioSample |
SAMN41092777 |
| SRA |
SRX24484736 |
