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Sample GSM8254062 Query DataSets for GSM8254062
Status Public on May 07, 2024
Title MPRA from HepG2 (ENCLB485DHD)
Sample type SRA
 
Source name Homo sapiens HepG2 cell line genetically modified (episome) using transient transfection, 24 hours post-nucleic acid delivery time
Organism Homo sapiens
Characteristics line: HepG2
biomaterial_type: cell line
biosample encode accession: ENCBS236QZU (SAMN41092630)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS236QZU
Sex: male
health state: hepatocellular carcinoma
dev stage: child
age: 15 years
passage number: 7
donor_id: ENCDO000AAC
lab: Ryan Tewhey, JAX
source: ATCC
link: ENCBS236QZU at ENCODE; https://www.encodeproject.org/ENCBS236QZU/
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/af9db6cf-b70f-4de9-8d78-accc77bfaf38/@@download/attachment/ENCODE%20MPRA%20Protocol%20-%20Tewhey%20Lab.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR222QJT/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR222QJT
assay title: MPRA
assembly: hg19, GRCh38
encode release date: 2023-02-12
lab: Ryan Tewhey, JAX
library encode accession: ENCLB485DHD
fragmentation methods: none
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date May 06, 2024
Last update date May 08, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE266710 MPRA from HepG2 (ENCSR222QJT)
Relations
BioSample SAMN41092630
SRA SRX24484769

Supplementary file Size Download File type/resource
GSM8254062_ENCLB485DHD_README.txt.gz 969 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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