NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM8254141 Query DataSets for GSM8254141
Status Public on May 07, 2024
Title MPRA from K562 (ENCLB483RFV)
Sample type SRA
 
Source name Homo sapiens K562 cell line genetically modified (episome) using transient transfection, 24 hours post-nucleic acid delivery time
Organism Homo sapiens
Characteristics line: K562
biomaterial_type: cell line
biosample encode accession: ENCBS864HNZ (SAMN41092848)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS864HNZ
Sex: female
health state: chronic myelogenous leukemia (CML)
dev stage: adult
age: 53 years
passage number: 8
donor_id: ENCDO000AAD
lab: Ryan Tewhey, JAX
source: ATCC
link: ENCBS864HNZ at ENCODE; https://www.encodeproject.org/ENCBS864HNZ/
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/af9db6cf-b70f-4de9-8d78-accc77bfaf38/@@download/attachment/ENCODE%20MPRA%20Protocol%20-%20Tewhey%20Lab.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NovaSeq 6000
 
Description https://www.encodeproject.org/experiments/ENCSR363XER/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR363XER
assay title: MPRA
assembly: hg19, GRCh38
possible controls: ENCSR830AFA
encode release date: 2023-02-12
lab: Ryan Tewhey, JAX
library encode accession: ENCLB483RFV
fragmentation methods: none
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date May 06, 2024
Last update date May 08, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL24676
Series (1)
GSE266723 MPRA from K562 (ENCSR363XER)
Relations
BioSample SAMN41092848
SRA SRX24484804

Supplementary file Size Download File type/resource
GSM8254141_ENCLB483RFV_README.txt.gz 646 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap