|
Status |
Public on May 07, 2024 |
Title |
MPRA from K562 (ENCLB483RFV) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens K562 cell line genetically modified (episome) using transient transfection, 24 hours post-nucleic acid delivery time
|
Organism |
Homo sapiens |
Characteristics |
line: K562 biomaterial_type: cell line biosample encode accession: ENCBS864HNZ (SAMN41092848) collection date: not applicable geographic location: not applicable encode accession: ENCBS864HNZ Sex: female health state: chronic myelogenous leukemia (CML) dev stage: adult age: 53 years passage number: 8 donor_id: ENCDO000AAD lab: Ryan Tewhey, JAX source: ATCC link: ENCBS864HNZ at ENCODE; https://www.encodeproject.org/ENCBS864HNZ/
|
Extracted molecule |
total RNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/af9db6cf-b70f-4de9-8d78-accc77bfaf38/@@download/attachment/ENCODE%20MPRA%20Protocol%20-%20Tewhey%20Lab.pdf
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR363XER/ *************** biological replicate number: 1 technical replicate number: 1 description: experiment encode accession: ENCSR363XER assay title: MPRA assembly: hg19, GRCh38 possible controls: ENCSR830AFA encode release date: 2023-02-12 lab: Ryan Tewhey, JAX library encode accession: ENCLB483RFV fragmentation methods: none
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
May 06, 2024 |
Last update date |
May 08, 2024 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL24676 |
Series (1) |
|
Relations |
BioSample |
SAMN41092848 |
SRA |
SRX24484804 |