|
Status |
Public on Nov 05, 2024 |
Title |
TIB-197 |
Sample type |
genomic |
|
|
Source name |
TIB-197
|
Organism |
Mus musculus |
Characteristics |
cell line: Hematologic cell line
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted and purified from the different cell lines using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy3 and Cy5
|
Label protocol |
Ilumina methylation microarrays
|
|
|
Hybridization protocol |
Illumina HIIScanSQ with Autoloader system
|
Scan protocol |
Illumina HIIScanSQ with Autoloader system
|
Description |
Illumina HiScanSQ Noguera-Castells_Average_Beta_Mus_Musculus.csv
|
Data processing |
Data was processed using sesame package pipeline in R environment hg19 and mm10 .csv format containing Average Beta value and detection P.value
|
|
|
Submission date |
Jun 21, 2024 |
Last update date |
Nov 05, 2024 |
Contact name |
Manel Esteller |
E-mail(s) |
pebc.share@gmail.com
|
Organization name |
Josep Carreras Leukaemia Research Institute (IJC)
|
Department |
Cancer and Leukemia Epigenetics and Biology Program (PEBCL)
|
Lab |
Cancer Epigenetics
|
Street address |
Ctra. de Can Ruti, Cami de les Escoles s/n
|
City |
Badalona |
State/province |
Barcelona |
ZIP/Postal code |
08916 |
Country |
Spain |
|
|
Platform ID |
GPL30650 |
Series (1) |
GSE270494 |
A DNA methylation database of human and mouse hematological malignancy cell lines |
|