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GEO accession:
Sample GSM84000
Query DataSets for GSM84000
Status
Public on Jan 01, 2006
Title
Rat_Normal_PVCN
Sample type
SAGE
Anchor
NlaIII
Tag Count
35515
Tag Length
10
Source name
Posterior Ventral Cochlear Nucleus
Organism
Rattus norvegicus
Characteristics
Strain: Brown Norway
Gender: Female
Age: 45 days
Tissue: Brain
Region: Posterior ventral cochlear nucleus
Extracted molecule
total RNA
Extraction protocol
Trizol protocol
Description
The posterior ventral cochlear nucleus was dissected from 40 normal, female, 45 day old, Brown Norway rat brains and total RNA extracted
Data processing
Sequences were imported into eSAGE for tag extraction and counting
Submission date
Nov 17, 2005
Last update date
Nov 19, 2008
Contact name
David R Friedland
E-mail(s)
dfriedla@mcw.edu
Phone
414-805-5625
Fax
414-805-7936
URL
http://www.mcw.edu
Organization name
Medical College of Wisconsin
Department
Otolaryngology and Communication Sciences
Street address
8701 Watertown Plank Rd
City
Milwaukee
State/province
WI
ZIP/Postal code
53226
Country
USA
Platform ID
GPL23
Series (1)
GSE3628
Rat Normal Cochlear Nucleus
Data table header descriptions
TAG
12556
COUNT
35515
TPM
tags per million
Data table
TAG
COUNT
TPM
ATAACACATA
3077
86639.45
ATACTGACAC
923
25989.02
GCTTCATCCA
400
11262.85
TAGGTACAGG
287
8081.09
AAAAAAAAAA
245
6898.49
GATGCCCCCC
225
6335.35
GCCTTCCTCA
221
6222.72
ACGTCTCAAA
177
4983.81
TCAGGCTGCC
176
4955.65
AGCCGTCCCT
164
4617.77
CACATACAAA
152
4279.88
TTGTTAGTGC
149
4195.41
CAAACATCCA
145
4082.78
CTAGTCTTTG
140
3942.00
CTAAGGAAGT
125
3519.64
GCATATTGAA
124
3491.48
GAATAATAAA
105
2956.50
AATCGGAGGC
103
2900.18
TCCAATAAAG
100
2815.71
GTGGCTCACA
98
2759.40
Total number of rows:
12556
Table truncated, full table size
234 Kbytes
.
Supplementary data files not provided
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