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GEO accession:
Sample GSM84001
Query DataSets for GSM84001
Status
Public on Jan 01, 2006
Title
Rat_Normal_DCN
Sample type
SAGE
Anchor
NlaIII
Tag Count
33901
Tag Length
10
Source name
Dorsal Cochlear Nucleus
Organism
Rattus norvegicus
Characteristics
Strain: Brown Norway
Gender: Female
Age: 45 days
Tissue: Brain
Region: Dorsal cochlear nucleus
Extracted molecule
total RNA
Extraction protocol
Trizol protocol
Description
The dorsal cochlear nucleus was dissected from 40 normal, female, 45 day old, Brown Norway rat brains and total RNA extracted
Data processing
Sequences were imported into eSAGE for tag extraction and counting
Submission date
Nov 17, 2005
Last update date
Nov 19, 2008
Contact name
David R Friedland
E-mail(s)
dfriedla@mcw.edu
Phone
414-805-5625
Fax
414-805-7936
URL
http://www.mcw.edu
Organization name
Medical College of Wisconsin
Department
Otolaryngology and Communication Sciences
Street address
8701 Watertown Plank Rd
City
Milwaukee
State/province
WI
ZIP/Postal code
53226
Country
USA
Platform ID
GPL23
Series (1)
GSE3628
Rat Normal Cochlear Nucleus
Data table header descriptions
TAG
12243
COUNT
33901
TPM
tags per million
Data table
TAG
COUNT
TPM
ATAACACATA
2686
79230.70
ATACTGACAC
992
29261.67
AAAAATCATC
389
11474.59
GCTTCATCCA
307
9055.78
TAGGTACAGG
235
6931.95
ACGTCTCAAA
226
6666.47
AAAAAAAAAA
178
5250.58
AGCCGTCCCT
168
4955.61
GCATATTGAA
168
4955.61
GATGCCCCCC
160
4719.62
GCCTTCCTCA
130
3834.70
TTGTTAGTGC
129
3805.20
CTAAGGAAGT
120
3539.72
CACATACAAA
119
3510.22
TCCAATAAAG
118
3480.72
GAATAATAAA
112
3303.74
CTAGTCTTTG
110
3244.74
GAAATATGTG
103
3038.26
CAAACATCCA
101
2979.26
TCAGGCTGCC
99
2920.27
Total number of rows:
12243
Table truncated, full table size
228 Kbytes
.
Supplementary data files not provided
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