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Sample GSM842867 Query DataSets for GSM842867
Status Public on Aug 01, 2012
Title human primary osteoblast passage 8 6 hours treated (1,25D3) Set3
Sample type RNA
 
Source name human primary osteoblast passage 8 6 hours treated
Organism Homo sapiens
Characteristics source tissue: femur
cell type: primary osteoblast
treatment: 1,25D3 (10nM)
Extracted molecule total RNA
Extraction protocol standard Exiqon protocol
Label Hy3
Label protocol standard Exiqon protocol
 
Hybridization protocol standard Exiqon protocol
Scan protocol standard Exiqon protocol
Data processing Raw data were re-scaled to account for differences in individual array signal intensities (MIDAS). Statistical Analysis of Microarrays (SAM) was performed (MEV), two class unpaired analysis, arrays sorted into two groups. For normalization of raw data, we utilized the locally weighted regression method to re-scale to account for system-related variations in individual array signal intensities to reveal biological variations using the Midas software.
 
Submission date Dec 05, 2011
Last update date Dec 04, 2015
Contact name Thomas Lisse
E-mail(s) tom.lisse@miami.edu
Organization name University of Miami
Department Biology
Street address 1801 Memorial Drive
City Coral Gables
State/province Florida
ZIP/Postal code 33146
Country USA
 
Platform ID GPL14957
Series (1)
GSE34144 Identification of miRNAs regulated by vitamin D within primary human osteoblasts

Data table header descriptions
ID_REF
VALUE MIDAS normalized signal intensity

Data table
ID_REF VALUE
1 14
2 -16
3 33
4 17
5 35
6 -12
7 -18
8 -4
9 -19
10 54
11 -7
12 10
13 1
14 -4
15 -1
16 -1
17 -12
18 981
19 -12
20 114

Total number of rows: 9360

Table truncated, full table size 73 Kbytes.




Supplementary file Size Download File type/resource
GSM842867_HOB3_-treated_14201751_2011-05-11.gpr.gz 400.4 Kb (ftp)(http) GPR
Processed data included within Sample table
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