|
Status |
Public on Sep 12, 2024 |
Title |
D1_NIL-NIL |
Sample type |
genomic |
|
|
Source name |
Monocyte-Macrophages
|
Organism |
Homo sapiens |
Characteristics |
cell type: Monocyte-Macrophages treatment: NIL
|
Treatment protocol |
Treated with LPS alone or in Combination with TCA inhbitors
|
Growth protocol |
Plastic Adhesion derived MDMs grown in RPMI+ 10% Human AB-serum + L-gluatmine+ penicillin and streprtomycin (1%)
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA extarcted using QIAGEN DNA kit
|
Label |
cy3,cy5
|
Label protocol |
As instructed by Illumina
|
|
|
Hybridization protocol |
Illumina Infinum BeadArray protocol
|
Scan protocol |
iScan Illumina
|
Description |
SAMPLE 1 Infinium Methylation EPIC
|
Data processing |
Minfi package in R Average Beta
|
|
|
Submission date |
Sep 11, 2024 |
Last update date |
Sep 12, 2024 |
Contact name |
Abhimanyu - |
E-mail(s) |
Abhimanyua@uchicago.edu
|
Organization name |
Baylor College of Medicine
|
Lab |
DiNardo Lab
|
Street address |
one Baylor Plaza
|
City |
Houston |
State/province |
Texas |
ZIP/Postal code |
77054 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (1) |
GSE276988 |
TCA metabolism regulates DNA hypermethylation in LPS and Mycobacterium tuberculosis–induced immune tolerance |
|