|
| Status |
Public on Sep 12, 2024 |
| Title |
D1_LPS_LPS |
| Sample type |
genomic |
| |
|
| Source name |
Monocyte-Macrophages
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Monocyte-Macrophages
treatment: LPS
|
| Treatment protocol |
Treated with LPS alone or in Combination with TCA inhbitors
|
| Growth protocol |
Plastic Adhesion derived MDMs grown in RPMI+ 10% Human AB-serum + L-gluatmine+ penicillin and streprtomycin (1%)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA extarcted using QIAGEN DNA kit
|
| Label |
cy3,cy5
|
| Label protocol |
As instructed by Illumina
|
| |
|
| Hybridization protocol |
Illumina Infinum BeadArray protocol
|
| Scan protocol |
iScan Illumina
|
| Description |
SAMPLE 2
Infinium Methylation EPIC
|
| Data processing |
Minfi package in R
Average Beta
|
| |
|
| Submission date |
Sep 11, 2024 |
| Last update date |
Sep 12, 2024 |
| Contact name |
Abhimanyu - |
| E-mail(s) |
Abhimanyua@uchicago.edu
|
| Organization name |
Baylor College of Medicine
|
| Lab |
DiNardo Lab
|
| Street address |
one Baylor Plaza
|
| City |
Houston |
| State/province |
Texas |
| ZIP/Postal code |
77054 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE276988 |
TCA metabolism regulates DNA hypermethylation in LPS and Mycobacterium tuberculosis–induced immune tolerance |
|
