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Sample GSM869324 Query DataSets for GSM869324
Status Public on Feb 02, 2012
Title Tubulointerstitium from IgAN patient_IgA11 [HG-U133A]
Sample type RNA
 
Source name Kidney biopsy from human IgAN
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the RNeasy mini kit from Qiagen, following the manufacturer’s instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol standard Affymetrix protocol
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description TubIgA11
Gene expression data from the tubulointerstitial compartment of human IgAN kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human by default CDF annotation were used for the normalization.
 
Submission date Feb 01, 2012
Last update date Feb 02, 2012
Contact name Celine C Berthier
Organization name University of Michigan
Street address 1150 W. Medical Center Dr, MSRB2
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platform ID GPL96
Series (2)
GSE35487 Expression data from human with IgA nephropathy (IgAN) [HG-U133A]
GSE35489 Expression data from human with IgA nephropathy (IgAN)
Relations
Reanalyzed by GSM869355

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
212893_at 7.873661053
207189_s_at 5.751590105
207190_at 4.713239481
212601_at 6.125808732
200808_s_at 6.562057684
215706_x_at 7.6973081
218639_s_at 7.120158786
216013_at 4.287273407
215263_at 4.448116316
216014_s_at 5.061394176
204026_s_at 6.659161721
218349_s_at 4.571066017
204812_at 7.185596235
217592_at 5.628735643
219904_at 5.796793224
220516_at 6.077108871
217593_at 4.974724444
218312_s_at 8.076892415
219676_at 4.964816308
206507_at 4.347485058

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM869324_TubIgA11.cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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