|
Status |
Public on Feb 02, 2012 |
Title |
Tubulointerstitium from IgAN patient_IgA11 [HG-U133A] |
Sample type |
RNA |
|
|
Source name |
Kidney biopsy from human IgAN
|
Organism |
Homo sapiens |
Characteristics |
tissue: Tubulointerstitium from kidney biopsy
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated using the RNeasy mini kit from Qiagen, following the manufacturer’s instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
|
|
|
Hybridization protocol |
standard Affymetrix protocol
|
Scan protocol |
GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
|
Description |
TubIgA11 Gene expression data from the tubulointerstitial compartment of human IgAN kidney
|
Data processing |
The data were analyzed using GenePattern pipeline: RMA method and Human by default CDF annotation were used for the normalization.
|
|
|
Submission date |
Feb 01, 2012 |
Last update date |
Feb 02, 2012 |
Contact name |
Celine C Berthier |
Organization name |
University of Michigan
|
Street address |
1150 W. Medical Center Dr, MSRB2
|
City |
Ann Arbor |
State/province |
MI |
ZIP/Postal code |
48109 |
Country |
USA |
|
|
Platform ID |
GPL96 |
Series (2) |
GSE35487 |
Expression data from human with IgA nephropathy (IgAN) [HG-U133A] |
GSE35489 |
Expression data from human with IgA nephropathy (IgAN) |
|
Relations |
Reanalyzed by |
GSM869355 |