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Sample GSM869333 Query DataSets for GSM869333
Status Public on Feb 02, 2012
Title Tubulointerstitium from IgAN patient_IgA22 [HG-U133A]
Sample type RNA
 
Source name Kidney biopsy from human IgAN
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the RNeasy mini kit from Qiagen, following the manufacturer’s instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol standard Affymetrix protocol
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Tub_IgA22
Gene expression data from the tubulointerstitial compartment of human IgAN kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human by default CDF annotation were used for the normalization.
 
Submission date Feb 01, 2012
Last update date Feb 02, 2012
Contact name Celine C Berthier
Organization name University of Michigan
Street address 1150 W. Medical Center Dr, MSRB2
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platform ID GPL96
Series (2)
GSE35487 Expression data from human with IgA nephropathy (IgAN) [HG-U133A]
GSE35489 Expression data from human with IgA nephropathy (IgAN)
Relations
Reanalyzed by GSM869364

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
212893_at 7.905896547
207189_s_at 5.823460126
207190_at 5.160174777
212601_at 6.283475678
200808_s_at 6.66677226
215706_x_at 7.614015279
218639_s_at 7.351323585
216013_at 4.21475377
215263_at 4.509320222
216014_s_at 5.084365795
204026_s_at 6.805515696
218349_s_at 4.461041393
204812_at 7.285407639
217592_at 5.910954538
219904_at 5.30544923
220516_at 5.864676433
217593_at 5.056472607
218312_s_at 8.09077986
219676_at 4.852172615
206507_at 4.135299787

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM869333_Tub_IgA22.cel.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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