|
Status |
Public on Jan 14, 2025 |
Title |
eCLIP from K562 (ENCLB076RMX) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens K562 cell line
|
Organism |
Homo sapiens |
Characteristics |
antibody: RPS6 line: K562 biomaterial_type: cell line biosample encode accession: ENCBS177POD (SAMN45079707) Sex: female health state: chronic myelogenous leukemia (CML) dev stage: adult age: 53 year passage number: 5 donor_id: ENCDO000AAD lab: Gene Yeo, UCSD source: ATCC collection date: not applicable geographic location: not applicable link: ENCBS177POD at ENCODE; https://www.encodeproject.org/ENCBS177POD/
|
Extracted molecule |
total RNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/027c82b0-601e-4543-9f37-0d60344a0163/@@download/attachment/seCLIP_SOP_v4.0.pdf
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
Illumina HiSeq 4000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR100ARZ/ *************** biological replicate number: 2 technical replicate number: 1 description: eCLIP experiment on K562 against RPS6 experiment encode accession: ENCSR100ARZ assay title: eCLIP assembly: GRCh38 possible controls: ENCSR911RWF encode release date: 2022-07-19 lab: Gene Yeo, UCSD library encode accession: ENCLB076RMX fragmentation methods: see document size range: 175-300
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
Dec 19, 2024 |
Last update date |
Jan 15, 2025 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL20301 |
Series (1) |
|
Relations |
BioSample |
SAMN45079707 |
SRA |
SRX27354276 |