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Sample GSM8693664 Query DataSets for GSM8693664
Status Public on Jan 14, 2025
Title eCLIP from K562 (ENCLB076RMX)
Sample type SRA
 
Source name Homo sapiens K562 cell line
Organism Homo sapiens
Characteristics antibody: RPS6
line: K562
biomaterial_type: cell line
biosample encode accession: ENCBS177POD (SAMN45079707)
Sex: female
health state: chronic myelogenous leukemia (CML)
dev stage: adult
age: 53 year
passage number: 5
donor_id: ENCDO000AAD
lab: Gene Yeo, UCSD
source: ATCC
collection date: not applicable
geographic location: not applicable
link: ENCBS177POD at ENCODE; https://www.encodeproject.org/ENCBS177POD/
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/027c82b0-601e-4543-9f37-0d60344a0163/@@download/attachment/seCLIP_SOP_v4.0.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR100ARZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against RPS6
experiment encode accession: ENCSR100ARZ
assay title: eCLIP
assembly: GRCh38
possible controls: ENCSR911RWF
encode release date: 2022-07-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB076RMX
fragmentation methods: see document
size range: 175-300
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 19, 2024
Last update date Jan 15, 2025
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE284822 eCLIP from K562 (ENCSR100ARZ)
Relations
BioSample SAMN45079707
SRA SRX27354276

Supplementary file Size Download File type/resource
GSM8693664_ENCFF015KGC_peaks_GRCh38.bed.gz 687.3 Kb (ftp)(http) BED
GSM8693664_ENCFF018KHT_peaks_GRCh38.bigBed 1.5 Mb (ftp)(http) BIGBED
GSM8693664_ENCFF505QFY_plus_strand_signal_of_unique_reads_GRCh38.bigWig 7.1 Mb (ftp)(http) BIGWIG
GSM8693664_ENCFF568TFB_transcript_quantifications_GRCh38.tsv.gz 1.2 Mb (ftp)(http) TSV
GSM8693664_ENCFF929BBP_minus_strand_signal_of_unique_reads_GRCh38.bigWig 6.8 Mb (ftp)(http) BIGWIG
GSM8693664_ENCLB076RMX_README.txt.gz 973 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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