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Sample GSM8693665 Query DataSets for GSM8693665
Status Public on Jan 14, 2025
Title eCLIP from K562 (ENCLB604AQS)
Sample type SRA
 
Source name Homo sapiens K562 immortalized cell line
Organism Homo sapiens
Characteristics antibody: RPS6
line: K562
biomaterial_type: cell line
biosample encode accession: ENCBS039CVO (SAMN06121500)
dev stage: adult
Sex: female
donor_id: ENCDO000AAD
age: 53 year
health state: chronic myelogenous leukemia (CML)
passage number: 5
lab: Gene Yeo, UCSD
link: ENCBS039CVO at ENCODE; https://www.encodeproject.org/ENCBS039CVO/
link: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/
link: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/027c82b0-601e-4543-9f37-0d60344a0163/@@download/attachment/seCLIP_SOP_v4.0.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR100ARZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against RPS6
experiment encode accession: ENCSR100ARZ
assay title: eCLIP
assembly: GRCh38
possible controls: ENCSR911RWF
encode release date: 2022-07-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB604AQS
fragmentation methods: see document
size range: 175-300
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 19, 2024
Last update date Jan 15, 2025
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE284822 eCLIP from K562 (ENCSR100ARZ)
Relations
BioSample SAMN06121500
SRA SRX27354277

Supplementary file Size Download File type/resource
GSM8693665_ENCFF013EJK_minus_strand_signal_of_unique_reads_GRCh38.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM8693665_ENCFF085EPU_transcript_quantifications_GRCh38.tsv.gz 1.5 Mb (ftp)(http) TSV
GSM8693665_ENCFF338ZYM_peaks_GRCh38.bed.gz 692.2 Kb (ftp)(http) BED
GSM8693665_ENCFF368NLU_peaks_GRCh38.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8693665_ENCFF457LIU_plus_strand_signal_of_unique_reads_GRCh38.bigWig 8.5 Mb (ftp)(http) BIGWIG
GSM8693665_ENCLB604AQS_README.txt.gz 970 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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