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GEO accession:
Sample GSM8693665
Query DataSets for GSM8693665
Status
Public on Jan 14, 2025
Title
eCLIP from K562 (ENCLB604AQS)
Sample type
SRA
Source name
Homo sapiens K562 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: RPS6
line: K562
biomaterial_type: cell line
biosample encode accession: ENCBS039CVO (SAMN06121500)
dev stage: adult
Sex: female
donor_id: ENCDO000AAD
age: 53 year
health state: chronic myelogenous leukemia (CML)
passage number: 5
lab: Gene Yeo, UCSD
link: ENCBS039CVO at ENCODE;
https://www.encodeproject.org/ENCBS039CVO/
link: Derived from ENCODE donor ENCDO000AAD;
https://www.encodeproject.org/ENCDO000AAD/
link: ATCC sample source;
http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/027c82b0-601e-4543-9f37-0d60344a0163/@@download/attachment/seCLIP_SOP_v4.0.pdf
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina HiSeq 4000
Description
https://www.encodeproject.org/experiments/ENCSR100ARZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against RPS6
experiment encode accession: ENCSR100ARZ
assay title: eCLIP
assembly: GRCh38
possible controls: ENCSR911RWF
encode release date: 2022-07-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB604AQS
fragmentation methods: see document
size range: 175-300
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 19, 2024
Last update date
Jan 15, 2025
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL20301
Series (1)
GSE284822
eCLIP from K562 (ENCSR100ARZ)
Relations
BioSample
SAMN06121500
SRA
SRX27354277
Supplementary file
Size
Download
File type/resource
GSM8693665_ENCFF013EJK_minus_strand_signal_of_unique_reads_GRCh38.bigWig
8.2 Mb
(ftp)
(http)
BIGWIG
GSM8693665_ENCFF085EPU_transcript_quantifications_GRCh38.tsv.gz
1.5 Mb
(ftp)
(http)
TSV
GSM8693665_ENCFF338ZYM_peaks_GRCh38.bed.gz
692.2 Kb
(ftp)
(http)
BED
GSM8693665_ENCFF368NLU_peaks_GRCh38.bigBed
1.2 Mb
(ftp)
(http)
BIGBED
GSM8693665_ENCFF457LIU_plus_strand_signal_of_unique_reads_GRCh38.bigWig
8.5 Mb
(ftp)
(http)
BIGWIG
GSM8693665_ENCLB604AQS_README.txt.gz
970 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
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