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Sample GSM88536 Query DataSets for GSM88536
Status Public on Dec 31, 2005
Title D11.5 Tubular pre-implantation embryos
Sample type SAGE
Anchor NlaIII
Tag Count 42353
Tag Length 10
 
Source name Porcine conceptus (sus scrofa)
Organism Sus scrofa
Characteristics In vivo derived porcine tubular embryos collected at 11.5 days of gestation. Day of AI being 0.
Extracted molecule polyA RNA
 
Description Comparison of gene expression in in vivo derived pre-implantation porcine embryos. An attempt to elucidate mechanism involved during pre-implantation embryo development.
 
Submission date Dec 19, 2005
Last update date Nov 19, 2008
Contact name Le Ann Blomberg
E-mail(s) LBlomberg@anri.barc.usda.gov
Phone 301-504-6338
Fax 301-504-5123
Organization name ARS-USDA
Department ANRI
Lab Biotechnology and Germplasm
Street address 10300 Baltimore Ave.
City Beltsville
State/province MD
ZIP/Postal code 20705
Country USA
 
Platform ID GPL1270
Series (1)
GSE3875 D11.5 Tubular Porcine Conceptus

Data table header descriptions
TAG Tag Sequence
COUNT Tag Frequency
TPM tags per million

Data table
TAG COUNT TPM
CCCATTGTAC 599 14143.04
GATTGTGGTA 546 12891.65
GCACACTAGG 448 10577.76
ATACTTGGAA 425 10034.71
AAGCCTGGAG 392 9255.54
TAGGTTGTCT 319 7531.93
CAGGCCACGC 268 6327.77
GCAGATTATA 246 5808.33
GCAGAGCTTT 232 5477.77
TGGAATGTTT 216 5099.99
CTGTACAACG 213 5029.16
TGCCCCTCCT 211 4981.94
TCCGTGGTTG 196 4627.77
TTTCCTCTCA 192 4533.33
GGCAAGCCCC 174 4108.33
TCTCCCTTTG 173 4084.72
GCCCTGGGGC 168 3966.66
ATGAGTGTAA 157 3706.94
TGAAGGCCTC 156 3683.33
ATCTGCCGTT 149 3518.05

Total number of rows: 12777

Table truncated, full table size 239 Kbytes.




Supplementary data files not provided

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