|
| Status |
Public on Mar 13, 2015 |
| Title |
Male Shek-Ki Chicken DNA vs female Dehong DNA |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Male Shek-Ki Chicken blood
|
| Organism |
Gallus gallus |
| Characteristics |
tissue: blood
age: adult
gender: Male
breed: Shek-Ki
|
| Treatment protocol |
Blood sample were got from adult chicken individuals by syringe and kept in 0.5M EDTA solution in order to avoid error.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using DNeasy Blood & Tissue kit(QIAGEN No.69504) and Wizard Genomic DNA purification kit(Promega No.A1125) by the standard protocal for each kit separately.
|
| Label |
cy5
|
| Label protocol |
1.5µg of genomic DNA was digested with restriction enzymes AluI and RsaI and fluorescently labelled using the Agilent Genomic DNA Labeling Kit PLUS (Agilent technologies).Test samples were labelled with cyanine 5-dUTP and the reference sample with cyanine 3-dUTP.
|
| |
|
| Channel 2 |
| Source name |
Dehong chicken
|
| Organism |
Gallus gallus |
| Characteristics |
tissue: blood
age: adult
breed: Dehong
gender: female
|
| Treatment protocol |
Blood sample were got from adult chicken individuals by syringe and kept in 0.5M EDTA solution in order to avoid error.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using DNeasy Blood & Tissue kit(QIAGEN No.69504) and Wizard Genomic DNA purification kit(Promega No.A1125) by the standard protocal for each kit separately.
|
| Label |
cy3
|
| Label protocol |
1.5µg of genomic DNA was digested with restriction enzymes AluI and RsaI and fluorescently labelled using the Agilent Genomic DNA Labeling Kit PLUS (Agilent technologies).Test samples were labelled with cyanine 5-dUTP and the reference sample with cyanine 3-dUTP.
|
| |
|
| |
| Hybridization protocol |
Array hybridization was performed using Agilent Oligo aCGH Hybridization Kit (Agilent technologies) for 40 h at 20 rpm in a 65℃ Agilent hybridization oven.
|
| Scan protocol |
Arrays were scanned at 3μm resolution using an Agilent Microarray Scanner, and image analysis was performed using Feature Extraction software 10.7 with 90% laser power value and PMT 100%.
|
| Description |
Male Shek-Ki Chicken DNA sample vs Dehong chicken DNA sample.DNA were collected from chicken blood with 0.5 M EDTA and stored at -20°C until DNA isolation.
|
| Data processing |
Agilent Feature Extraction Software 10.7 was used for background subtraction and LOWESS normalization.
|
| |
|
| Submission date |
Mar 14, 2012 |
| Last update date |
Mar 13, 2015 |
| Contact name |
ming tian |
| E-mail(s) |
mingtian830618@gmail.com
|
| Phone |
+86 15001088986
|
| Organization name |
China Agricultural University
|
| Street address |
No.2, Yuan Ming Yuan West Road, Haidian District
|
| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
| |
|
| Platform ID |
GPL13398 |
| Series (1) |
| GSE36504 |
Dehong chicken blood samples vs. 22 different chicken blood samples belonging to 11 breeds |
|
