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Sample GSM898 Query DataSets for GSM898
Status Public on Feb 12, 2002
Title cdc15 150 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 150 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n34
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 491 488 13232 454 6 453 448 669 9 678 -.021 0 -10.522 .1 54 0 2205.333 1470.222 0 .001 0 1361 37 21 28 91 98 -10.522
2 492 488 9745 436 445 440 657 651 -.132 0 .038 45 0 0 1252 37 21 28 100 107
3 490 488 5815 440 442 440 657 657 .141 0 .108 37 0 0 1153 37 21 28 109 116
4 485 480 57 400 442 440 657 597 -.224 0 .191 8 0 -.09 1154 37 21 28 118 125
5 480 472 218 663 231 437 432 645 345 990 .802 0 .662 .5 13 13 .944 .632 1.06 1.583 1.013 1155 37 21 28 127 134 .662
6 484 472 33 458 26 438 432 645 39 684 .876 0 .241 1 5 2 1.269 .846 .788 1.182 .46 1155 37 21 28 136 143 .241
7 481 464 210 626 186 443 440 657 277 934 .829 0 .399 1 16 13 1.129 .758 .886 1.319 .798 1155 37 21 28 145 152 .399
8 478 464 24 455 15 439 440 657 22 679 .884 0 -.126 1 5 2 1.6 1.091 .625 .917 .468 1170 37 21 28 154 161 -.126
9 477 464 23 437 441 440 657 652 .853 0 .5 2 0 .433 1170 37 21 28 163 170
10 461 456 34 431 443 448 669 643 .23 0 .25 2 0 .117 1169 37 21 28 173 180
11 457 456 26 441 446 448 669 658 .082 0 1 5 0 .047 1169 37 21 28 182 189
12 454 456 19 453 455 456 681 676 .021 0 1 2 0 .014 1154 37 21 28 191 198
13 451 448 488 1278 814 468 464 693 1214 1907 .874 0 1.315 .904 27 27 .6 .402 1.668 2.488 1.76 1154 37 21 28 200 207 1.315
14 449 448 30 485 13 475 472 704 20 724 .495 0 -.585 .6 2 2 2.308 1.5 .433 .667 .373 1154 37 21 28 209 216 -.585
15 448 448 23 466 477 472 704 696 .367 0 .667 5 0 .223 1154 37 21 28 218 225
16 446 448 17 459 478 472 704 685 .433 0 1.111 2 0 .234 1154 37 21 28 227 234
17 446 448 27 467 473 472 704 697 .655 0 .452 5 2 .335 1154 37 21 28 236 243
18 446 448 28 477 13 469 464 693 19 712 .048 0 -.559 1.5 5 0 2.154 1.474 .464 .679 .026 1154 37 21 28 245 252 -.559
19 474 448 37 471 7 481 464 693 10 703 .851 0 -1.888 .571 5 0 5.286 3.7 .189 .27 .489 1155 37 21 28 254 261 -1.888
20 474 448 24 480 16 481 464 693 23 716 .852 0 -.061 1 2 0 1.5 1.043 .667 .958 .497 1155 37 21 28 263 270 -.061

Total number of rows: 8832

Table truncated, full table size 992 Kbytes.




Supplementary data files not provided

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