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Sample GSM908184 Query DataSets for GSM908184
Status Public on Mar 04, 2013
Title E176_08_Placebo_1_B
Sample type RNA
Source name PBMC
Organism Homo sapiens
Characteristics sample: E176_08_Placebo_1
treatment: Placebo
weeks of treatment: 1
subject: E176_08
Treatment protocol Human PBMCs were isolated by stratifying of whole blood on Ficoll-Paque PREMIUM (GE Healthcare; Pscataway, NJ). Subjects were randomized in a 1:1 fashion to receive either metreleptin or placebo, for a period of 36 weeks in the form of a self-administered daily subcutaneous injection.
Extracted molecule total RNA
Extraction protocol RNA was isolated from PBMCs using the manufacturer’s protocol for Trizol Reagent (Invitrogen, Grand Island, NY) and further purified using RNAeasy spin columns (Qiagen, Valencia, CA). RNA concentration and purity were determined from 260nm/280 nm absorbances. RNA integrity was determined using the Agilent 2100 BioChip (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol biotin, according to manufacturer's recommendations
Hybridization protocol cRNA, according to manufacturer's recommendations
Scan protocol according to manufacturer's recommendations
Data processing RMA; RMA preprocessed log2 expression values
Submission date Apr 02, 2012
Last update date Mar 04, 2013
Contact name Dario Greco
Organization name Tampere University
Department Faculty of Medicine and Health Technology
Lab Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE)
Street address Arvo ylpön Katu 34
City Tampere
ZIP/Postal code 33520
Country Finland
Platform ID GPL15396
Series (1)
GSE36990 Gene expression profile of PBMCs in response to metreleptin treatment at different time points.

Data table header descriptions
VALUE log2 RMA normalized signal

Data table
100009676_at 2.377516521
10000_at 2.476799143
100049716_at 3.746384613
10004_at 3.809065118
10008_at 3.090187368
100093630_at 8.598300974
10009_at 7.273806112
100101467_at 3.275346926
100113407_at 4.354952347
10011_at 5.575414229
100124700_at 1.733650015
100125288_at 3.448249408
100126784_at 1.956064355
100126791_at 1.814192152
100126793_at 3.200304617
100127891_at 2.789850372
100127983_at 3.686262367
100128071_at 3.503162182
100128098_at 2.443143644
100128139_at 1.770764631

Total number of rows: 7906

Table truncated, full table size 166 Kbytes.

Supplementary file Size Download File type/resource
GSM908184_Holly_12.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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