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Sample GSM909 Query DataSets for GSM909
Status Public on Feb 12, 2002
Title cdc15 210 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 210 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n38
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 515 512 11519 372 68 306 304 326 74 400 .895 0 -7.282 .01 51 16 169.397 155.662 .006 .006 .008 1366 37 32 39 92 99 -7.282
2 515 512 11314 377 73 306 304 326 79 405 .842 0 -7.162 .008 43 16 154.986 143.215 .006 .007 .009 1258 37 32 39 101 108 -7.162
3 509 504 5144 378 66 314 312 335 71 406 .675 0 -6.179 .052 37 10 77.939 72.451 .013 .014 .01 1159 37 32 39 110 117 -6.179
4 507 504 37 339 27 317 312 335 29 364 .096 0 -.351 2.5 5 5 1.37 1.276 .73 .784 .052 1159 37 32 39 119 126 -.351
5 507 504 202 716 404 310 312 335 434 769 .917 0 1.103 1.15 18 18 .5 .465 2 2.149 2.109 1159 37 32 39 128 135 1.103
6 521 512 36 330 26 308 304 326 28 354 .676 0 -.363 .677 0 8 1.385 1.286 .722 .778 .435 1159 37 32 39 137 144 -.363
7 623 512 182 553 257 309 296 318 276 594 .45 0 .601 .667 18 18 .708 .659 1.412 1.516 .189 1159 37 32 39 146 153 .601
8 624 512 32 324 44 299 280 301 47 348 .841 0 .555 1 2 10 .727 .681 1.375 1.469 .118 1159 37 32 39 155 162 .555
9 625 512 2354 652 372 296 280 301 400 701 .993 0 -2.557 .333 16 16 6.328 5.885 .158 .17 .168 1159 37 32 39 164 171 -2.557
10 610 512 24 307 27 294 280 301 29 330 .912 0 .273 1 2 10 .889 .828 1.125 1.208 .115 1159 37 32 39 173 180 .273
11 600 512 16 322 34 296 288 309 37 346 .875 0 1.209 2.5 0 10 .471 .432 2.125 2.313 .117 1159 37 32 39 182 189 1.209
12 514 512 12 372 84 288 288 309 91 400 .56 0 2.923 1.5 2 10 .143 .132 7 7.583 1.202 1159 37 32 39 191 198 2.923
13 545 520 445 1102 814 292 288 309 875 1184 .825 0 .975 2.073 24 35 .547 .509 1.829 1.966 1.269 1159 37 32 39 200 207 .975
14 548 520 30 355 75 288 280 301 80 381 .447 0 1.415 2 5 10 .4 .375 2.5 2.667 .138 1159 37 32 39 209 216 1.415
15 551 528 4831 1249 969 283 280 301 1042 1343 .944 0 -2.213 .167 27 21 4.986 4.636 .201 .216 .204 1159 37 32 39 218 225 -2.213
16 549 528 26 317 37 285 280 301 39 340 .524 0 .585 2 0 10 .703 .667 1.423 1.5 .115 1159 37 32 39 227 234 .585
17 539 520 30 352 72 285 280 301 77 378 .288 0 1.36 .667 2 8 .417 .39 2.4 2.567 .12 1159 37 32 39 236 243 1.36
18 514 512 5 345 65 283 280 301 69 370 .289 0 3.787 1.429 0 10 .077 .072 13 13.8 .691 1159 37 32 39 245 252 3.787
19 513 512 27 338 58 283 280 301 62 363 .455 0 1.199 1.1 0 13 .466 .435 2.148 2.296 .914 1159 37 32 39 254 261 1.199
20 513 512 10 299 19 281 280 301 20 321 .431 0 1 1 0 8 .526 .5 1.9 2 .464 1159 37 32 39 263 270 1

Total number of rows: 8832

Table truncated, full table size 999 Kbytes.




Supplementary data files not provided

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