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Sample GSM914240 Query DataSets for GSM914240
Status Public on May 01, 2012
Title wildtype-whiteprepupae4
Sample type RNA
 
Source name wildtype-whiteprepupae4
Organism Drosophila melanogaster
Characteristics tissue: white prepupa
genotype/variation: wildtype
Treatment protocol RNAi
Growth protocol Drosophila cornmeal
Extracted molecule total RNA
Extraction protocol Trizol-Qiagen
Label Cy5
Label protocol two-color Quick Amp labeling Kit
 
Hybridization protocol Tecan HS 4800 Pro Hybridization Station
Scan protocol Agilent Technologies Scanner G2505C US80900103
Description US80900103_251897210233_S01_GE2_107_Sep09_1_4.txt
Biological replicate
Data processing Agilent Feature Extraction Software, Bioconductor package marray function backgroundCorrect with method option normexp for background subtraction; function normalizewithArrays with method option loess for within array normalization ; function normalizebetweenArrays with method option Aquantile for between array normalization, All FLAG data points treated as NA (null).
 
Submission date Apr 13, 2012
Last update date May 01, 2012
Contact name Sidi Chen
E-mail(s) chensidi@mit.edu
Phone 7734144158
Organization name MIT
Department Biology
Lab Sharp
Street address 77 Mass Ave, 76-461
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL6385
Series (2)
GSE36574 Zeus RNAi expression profiling
GSE36920 Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene

Data table header descriptions
ID_REF
VALUE normalized log2 signal

Data table
ID_REF VALUE
1 8.763548712
2 7.754273879
3 7.723636024
4 7.643753102
5 7.586266115
6 7.583922605
7 7.515758838
8 7.50473183
9 7.508938869
10 7.569884977
11 7.612392166
12 10.63480046
13 7.626101418
14 9.725362988
15 7.583440326
16 7.685724633
17 8.532203603
18 9.245286877
19 15.53560269
20 7.518483566

Total number of rows: 45020

Table truncated, full table size 775 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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