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Sample GSM914252 Query DataSets for GSM914252
Status Public on May 01, 2012
Title wildtype-reproductive-organ2
Sample type RNA
 
Source name wildtype-reproductive-organ2
Organism Drosophila melanogaster
Characteristics tissue: reproductive organ
genotype/variation: wildtype
Treatment protocol RNAi
Growth protocol Drosophila cornmeal
Extracted molecule total RNA
Extraction protocol Trizol-Qiagen
Label Cy5
Label protocol two-color Quick Amp labeling Kit
 
Hybridization protocol Tecan HS 4800 Pro Hybridization Station
Scan protocol Agilent Technologies Scanner G2505C US80900103
Description US80900103_251897210154_S01_GE2_105_Dec08_1_4.txt
Biological replicate
Data processing Agilent Feature Extraction Software, Bioconductor package marray function backgroundCorrect with method option normexp for background subtraction; function normalizewithArrays with method option loess for within array normalization ; function normalizebetweenArrays with method option Aquantile for between array normalization, All FLAG data points treated as NA (null).
 
Submission date Apr 13, 2012
Last update date May 01, 2012
Contact name Sidi Chen
E-mail(s) chensidi@mit.edu
Phone 7734144158
Organization name MIT
Department Biology
Lab Sharp
Street address 77 Mass Ave, 76-461
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL6385
Series (2)
GSE36574 Zeus RNAi expression profiling
GSE36920 Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene

Data table header descriptions
ID_REF
VALUE normalized log2 signal

Data table
ID_REF VALUE
1 7.839969082
2 6.004278593
3 5.894082587
4 6.045444629
5 6.062355172
6 6.070909107
7 6.055185825
8 6.023499789
9 5.992425725
10 6.101454215
11 null
12 10.71011197
13 6.074570477
14 6.169914598
15 6.417874298
16 14.84181512
17 6.437080211
18 9.821869509
19 14.79406237
20 6.141669392

Total number of rows: 45020

Table truncated, full table size 769 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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