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Sample GSM914256 Query DataSets for GSM914256
Status Public on May 01, 2012
Title Zeus-RNAi-reproductive-organ2
Sample type RNA
 
Source name Zeus-RNAi-reproductive-organ2
Organism Drosophila melanogaster
Characteristics tissue: reproductive organ
genotype/variation: Zeus
Treatment protocol RNAi
Growth protocol Drosophila cornmeal
Extracted molecule total RNA
Extraction protocol Trizol-Qiagen
Label Cy3
Label protocol two-color Quick Amp labeling Kit
 
Hybridization protocol Tecan HS 4800 Pro Hybridization Station
Scan protocol Agilent Technologies Scanner G2505C US80900103
Description US80900103_251897210154_S01_GE2_105_Dec08_1_4.txt
Biological replicate
Data processing Agilent Feature Extraction Software, Bioconductor package marray function backgroundCorrect with method option normexp for background subtraction; function normalizewithArrays with method option loess for within array normalization ; function normalizebetweenArrays with method option Aquantile for between array normalization, All FLAG data points treated as NA (null).
 
Submission date Apr 13, 2012
Last update date May 01, 2012
Contact name Sidi Chen
E-mail(s) chensidi@mit.edu
Phone 7734144158
Organization name MIT
Department Biology
Lab Sharp
Street address 77 Mass Ave, 76-461
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL6385
Series (2)
GSE36574 Zeus RNAi expression profiling
GSE36920 Reshaping of global gene expression networks and sex-biased gene expression by integration of a nascent gene

Data table header descriptions
ID_REF
VALUE normalized log2 signal

Data table
ID_REF VALUE
1 7.959027094
2 6.102558196
3 6.039193435
4 6.081040304
5 6.115114091
6 null
7 6.083283069
8 6.106369794
9 6.098501914
10 6.109015389
11 null
12 9.485310442
13 6.175241265
14 6.236482627
15 6.399051647
16 12.75241265
17 6.461655221
18 9.667959999
19 14.93686658
20 6.14444844

Total number of rows: 45020

Table truncated, full table size 770 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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