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Sample GSM920036 Query DataSets for GSM920036
Status Public on Dec 10, 2012
Title Healthy Living donor [H1-Tub-LD3]
Sample type RNA
 
Source name Kidney Biopsy from Human Healthy Living donor
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene expression data from the tubulointerstitium of human pre-transplant living donor control kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL14663
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 9.496249722
9 7.943091083
10 6.065046966
12 6.830240015
13 5.400814503
14 8.312066198
15 4.438516721
16 9.02773115
18 10.27803827
19 7.821388216
20 5.367082989
21 5.716764682
22 7.785812896
23 8.237906177
24 5.838979252
25 8.003290758
26 9.669112189
27 5.165724724
28 5.832850201
29 6.769567511

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920036_H1-Tub-LD3.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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