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Sample GSM920055 Query DataSets for GSM920055
Status Public on Dec 10, 2012
Title Healthy Living donor [H7-Tub-LD1168]
Sample type RNA
 
Source name Kidney Biopsy from Human Healthy Living donor
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene expression data from the tubulointerstitium of human pre-transplant living donor control kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL11670
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 9.348449805
9 7.82325687
10 5.71293957
12 6.644126032
13 5.26346244
14 8.385262014
15 4.387684131
16 9.00240051
18 10.34389917
19 8.506268357
20 5.198617108
21 5.470503736
22 7.842669174
23 8.160894022
24 5.574595575
25 7.508954518
26 11.44669899
27 5.200811723
28 5.412324209
29 5.885935519

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920055_H7-Tub-LD1168.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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