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Sample GSM920062 Query DataSets for GSM920062
Status Public on Dec 10, 2012
Title Healthy Living donor [H7-Tub-LD1175]
Sample type RNA
 
Source name Kidney Biopsy from Human Healthy Living donor
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene expression data from the tubulointerstitium of human pre-transplant living donor control kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL11670
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 10.44100751
9 7.461489586
10 5.84004949
12 8.020799575
13 5.598261753
14 8.383508759
15 4.761497271
16 9.357331342
18 9.84426098
19 8.490195091
20 5.345036789
21 5.625298477
22 7.753105894
23 8.218113942
24 5.628837206
25 7.339700992
26 10.9116067
27 5.364137129
28 5.455076949
29 6.630101331

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920062_H7-Tub-LD1175.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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