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Sample GSM920069 Query DataSets for GSM920069
Status Public on Dec 10, 2012
Title Healthy Living donor [H7-Tub-LD1184]
Sample type RNA
 
Source name Kidney Biopsy from Human Healthy Living donor
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene expression data from the tubulointerstitium of human pre-transplant living donor control kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL11670
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 9.337045402
9 7.585505099
10 5.845290512
12 7.259102968
13 5.457847659
14 8.271575152
15 4.441213415
16 9.072595981
18 10.12273024
19 8.13541756
20 5.235544499
21 5.596195596
22 7.647869832
23 8.104204659
24 5.754656748
25 7.347063952
26 11.18164737
27 4.997464885
28 5.597219652
29 6.472220379

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920069_H7-Tub-LD1184.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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