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Sample GSM920071 Query DataSets for GSM920071
Status Public on Dec 10, 2012
Title Hypertensive nephropathy [H2-Tub-HT10]
Sample type RNA
 
Source name Kidney Biopsy from Human Hypertensive nephropathy
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene Expression data from the tubulointerstitial compartment of human Hypertensive nephropathy kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL14663
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 9.320857529
9 7.141595867
10 5.948137364
12 7.680991668
13 5.148297387
14 8.222869091
15 4.785166586
16 9.285320781
18 8.585638578
19 7.163520922
20 5.270821566
21 6.033994959
22 7.725818439
23 8.474903336
24 5.506253608
25 7.865406761
26 10.69215777
27 5.054589845
28 5.700275615
29 6.057480903

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920071_H2-Tub-HT10.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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